PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G150600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 271aa    MW: 29306.6 Da    PI: 7.6004
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G150600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.7e-123685355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        ++h ++Er+RR+++N+ +  Lr+l P +   + k+ + a+i   A+++I++Lq
  Sevir.5G150600.1.p 36 MSHIAVERNRRRQMNEHLKVLRSLTPAL---YIKRGDQASIIGGAIDFIRELQ 85
                        589*************************...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.54E-162796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.7923384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.04E-113688No hitNo description
Gene3DG3DSA:4.10.280.107.7E-133796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-93785IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-123990IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009913Biological Processepidermal cell differentiation
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MHIYSWVSLL CLQLVATSIT SIIHRPDPST KQQLAMSHIA VERNRRRQMN EHLKVLRSLT  60
PALYIKRGDQ ASIIGGAIDF IRELQQVLDS LEARKKRRSS SGSGGFGFTP SPTPSPRSHL  120
LSSSGGATSS SAGSSTPSPP VVGKAAPAVK ELAACCNSPV ADVEARISGA NVLLRTLSRR  180
APGQAATMVA LLEALHLEVL HLNISTMDDT VLHSFVLKIG LECQVSVEDL AYEVQQTFVC  240
GREQEQDHEQ LVLVDQQENN LMYSAMPMTI *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269694e-76KJ726969.1 Zea mays clone pUT3670 bHLH transcription factor (bHLH82) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968634.11e-172PREDICTED: transcription factor MUTE
SwissprotQ9M8K67e-71MUTE_ARATH; Transcription factor MUTE
TrEMBLK3XR971e-142K3XR97_SETIT; Uncharacterized protein
STRINGSi004438m1e-142(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111443441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.12e-58bHLH family protein